Petr Ryšavý

Petr Ryšavý

Researcher in the Intelligent Data Analysis group of the Department of Computer Science of FEE, Czech Technical University in Prague

Publications

Journal papers

  1. Ryšavý, P., & Železný, F. (2023). Reference-free phylogeny from sequencing data. BioData Mining, 16(1), 13. https://doi.org/10.1186/s13040-023-00329-x [details]
  2. Trsová, I., Hruštincová, A., Krejčík, Z., Kundrát, D., Holoubek, A., Štaflová, K., … Dostálová Merkerová, M. (2023). Expression of circular RNAs in myelodysplastic neoplasms and their association with mutations in the splicing factor gene SF3B1. Molecular Oncology, 17(12), 2565–2583. [https://doi.org/https://doi.org/10.1002/1878-0261.13486](https://doi.org/https://doi.org/10.1002/1878-0261.13486 [details]
  3. Ryšavý, P., Kléma, J., & Merkerová, M. D. (2022). circGPA: circRNA functional annotation based on probability-generating functions. BMC Bioinformatics, 23(1), 392. https://doi.org/10.1186/s12859-022-04957-8 [details]
  4. Ryšavý, P., & Železný, F. (2019). Estimating sequence similarity from read sets for clustering next-generation sequencing data. Data Mining and Knowledge Discovery, 33(1), 1–23. https://doi.org/10.1007/s10618-018-0584-8 [details]

Conference papers

  1. Ryšavý, P., & Železný, F. (\noop{3001}Accepted to ISBRA 2022). An Algorithm to Calculate the $p$-value of the Monge-Elkan Distance. [details]
  2. Ryšavý, P., & Železný, F. (2017). Estimating Sequence Similarity from Contig Sets. In N. Adams, A. Tucker, & D. Weston (Eds.), Advances in Intelligent Data Analysis XVI: 16th International Symposium, IDA 2017 (pp. 272–283). Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-68765-0_23 [details]
  3. Ryšavý, P., & Hamerly, G. (2016). Geometric methods to accelerate $k$-means algorithms. In Proceedings of the 2016 SIAM International Conference on Data Mining (pp. 324–332). https://doi.org/10.1137/1.9781611974348.37 [details]
  4. Ryšavý, P., & Železný, F. (2016). Estimating Sequence Similarity from Read Sets for Clustering Sequencing Data. In H. Boström, A. Knobbe, C. Soares, & P. Papapetrou (Eds.), Advances in Intelligent Data Analysis XV: 15th International Symposium, IDA 2016 (pp. 204–214). Cham: Springer International Publishing. https://doi.org/10.1007/978-3-319-46349-0_18 [details]

Other publications

  1. Hruštincová, A., Trsová, I., Krejčík, Z., Kundrát, D., Běličková, M., Kaisrliková, M., … Merkerová, M. D. (2023). P116 - Topic: AS07-Singular Entities/Subtypes/AS07d-MDS with ring sideroblasts: SF3B1 MUTATIONS AND THEIR IMPACT ON CELLULAR BIOENERGETICS IN MYELODYSPLASTIC SYNDROMES. Leukemia Research, 128, 107251. [https://doi.org/https://doi.org/10.1016/j.leukres.2023.107251](https://doi.org/https://doi.org/10.1016/j.leukres.2023.107251 [details]
  2. Trsová, I., Bělicková, M., Hruštincová, A., Kaisrlíková, M., Lenertová, Z., Kundrát, D., … Dostálová Merkerová, M. (2022). {Upregulation of ZEB1-Derived Circular RNAs Is Associated with SF3B1-Mutated Myelodysplastic Neoplasms}. Blood, 140(Supplement 1), 4005–4006. https://doi.org/10.1182/blood-2022-159466 [details]
  3. Ryšavý, P. (2019). Approximate search in genomic data. In L. Husník (Ed.), Proceedings of the International Student Scientific Conference Poster – 23/2019. Czech Technical University in Prague. http://poseidon2.feld.cvut.cz/conf/poster/poster2019/proceedings/POSTER_2019.pdf [details]
  4. Ryšavý, P. (2018). On Sequence Overlaps Minimizing Post-normalized Edit Distance. In L. Husník (Ed.), Proceedings of the International Student Scientific Conference Poster – 22/2018. Czech Technical University in Prague. http://poseidon2.feld.cvut.cz/conf/poster/poster2018/proceedings/Poster_2018/Section_IC/IC_055_Rysavy.pdf [details]
  5. Ryšavý, P. (2017). Using Tries for Evaluating Monge-Elkan Distance on Genomic Sequences. In L. Husník (Ed.), Proceedings of the International Student Scientific Conference Poster – 21/2017. Czech Technical University in Prague. http://radio.feld.cvut.cz/conf/poster/poster2017/proceedings/Poster_2017/Section_IC/IC_017_Rysavy.pdf [details]