The circGPA algorithm

This page serves as a storage of data for the following paper:

Petr Ryšavý, Jiří Kléma, Michaela Dostálová Merkerová
circGPA: circRNA Functional Annotation Based on Probability-generating Functions

The source code used to generate the paper is on https://github.com/petrrysavy/circgpa-paper.

This archive (1.8 GB) contains annotation of human circrnas with C5 msigdb terms that have size between 10 and 1000 genes. A trimmed version (200MB) that contains only terms with FDR p-value less than 5% is available. Here, download supplementary outputs (100 MB) for the test sequences in the paper. To generate the same results, clone the repository and run the following code:

git clone https://github.com/petrrysavy/circgpa-paper
wget https://ida.fel.cvut.cz/~rysavy/circgpa/hsa_circ_short.zip

unzip hsa_circ_short.zip
Rscript writeTableForEnrichmentMap.R hsa_circ_1234567
Rscript delta_report.R hsa_circ_1234567

More details to be available soon.